In times of need, if you look in the right place, you just may see a strange telephone number scrawled in red. If you call this number, you will hear a young man introduce himself as the Yato God. Yato is a minor deity and a self-proclaimed "Delivery God," who dreams of having millions of worshippers. Without a single shrine dedicated to his name, however, his goals are far from being realized. He spends his days doing odd jobs for five yen apiece, until his weapon partner becomes fed up with her useless master and deserts him. Just as things seem to be looking grim for the god, his fortune changes when a middle school girl, Hiyori Iki, supposedly saves Yato from a car accident, taking the hit for him. Remarkably, she survives, but the event has caused her soul to become loose and hence able to leave her body. Hiyori demands that Yato return her to normal, but upon learning that he needs a new partner to do so, reluctantly agrees to help him find one. And with Hiyori's help, Yato's luck may finally be turning around. [Written by MAL Rewrite]

Keitaro Urashima promised a girl when he was young that they would meet up again at Tokyo University in the future. Sadly, in the National Practice Exam, Keitaro ranked 27th from the bottom. Knowing his grandmother owned a hotel, Keitaro intended to stay there while continuing his studies for Tokyo U, only to find out the hotel had long been transformed into an all-girls dormitory. Through an odd twist of fate, Keitaro eventually became the manager of the dorm, beginning his life of living with five other girls.

Keitaro has finally passed the entrance exams, and is officially a Toudai student. But after breaking his leg in an accident in the entrance ceremony, he thought and re-evaluated himself. Having new goals, Keitaro follows Seta on an overseas archeology trip. During his absence, however, all was not well in Hinata Lodge. Urashima Kanako, Keitaro's sister, arrives on the scene. She claims to be the new manager of Hinata Lodge starts to go against all the tenants. Things become even more complicated when they recieve a letter from Keitaro. The tenants and Kanako made a big mess trying to get the letter, but Seta's car crashes in before anyone could read the letter...

Yato and Yukine have finally mended their relationship as god and Regalia, and everyone has returned to their daily life. Yato remains a minor and unknown deity who continues taking odd jobs for five yen apiece in the hopes of one day having millions of worshippers and his own grand shrine. Hiyori Iki has yet to have her loose soul fixed by Yato, but she enjoys life and prepares to attend high school nonetheless. Taking place immediately after the first season, Noragami Aragoto delves into the complicated past between Yato and the god of war Bishamon. The female god holds a mysterious grudge against Yato, which often results in violent clashes between them. It doesn't help that Bishamon's most trusted and beloved Regalia, Kazuma, appears to be indebted to Yato. When lives are on the line, unraveling these mysteries and others may be the only way to correct past mistakes. [Written by MAL Rewrite]