Hailing from America, Jabberwock—a street basketball team with skills comparable to those of the NBA—has come to Japan to play an exhibition match against Strky, a team of former third-year students who once played in the Interhigh and Winter Cup. However, due to the vast difference in skill, Jabberwock easily wins. Their captain, Nash Gold Jr., mocks the basketball style of all players in Japan by comparing them to monkeys.

Infuriated by the nasty comment, Kagetora Aida challenges them to a revenge match. Because of pride and the belief that the results will be no different, Nash accepts the challenge. Kagetora then assembles Vorpal Swords, a team composed of the Generation of Miracles, including Kuroko Tetsuya and Kagami Taiga, for they are the only ones who stand a chance against a foe that seems unbeatable from every angle.

Izayoi Sakamaki, Asuka Kudou, and You Kasukabe are extraordinary teenagers who are blessed with psychic powers but completely fed up with their disproportionately mundane lives—until, unexpectedly, each of them receives a strange envelope containing an invitation to a mysterious place known as Little Garden. Inexplicably dropped into a vast new world, the trio is greeted by Kurousagi, who explains that they have been given a once-in-a-lifetime chance to participate in special high-stakes games using their abilities. In order to take part, however, they must first join a community. Learning that Kurousagi's community "No Names" has lost its official status and bountiful land due to their defeat at the hands of a demon lord, the group sets off to help reclaim their new home's dignity, eager to protect its residents and explore the excitement that Little Garden has to offer. [Written by MAL Rewrite]

Kimito Kagurazaka is a commoner with a fetish for men's muscles—or at least that's the lie he must keep telling if he wants to keep himself out of trouble at the elite all-girls school, Seikain Academy. Kidnapped by the school under the assumption that he prefers men, Kimito is made to be their "commoner sample," exposing the girls to both commoner and man so that the transition to the world after school is not jarring. Threatened with castration should his sexual preferences not match the school's assumptions, Kimito keeps up the facade to protect his manhood. But there are eccentric individuals around every corner who begin to make Kimito's life even more difficult. Among them are Aika Tenkuubashi, a social outcast who blurts out whatever comes to mind; Hakua Shiodome, a young genius; Karen Jinryou, the daughter of samurai who is obsessed with defeating Kimito; and Reiko Arisugawa, the perfect student who has delusions of marrying Kimito. Along with the commoner himself, these four girls make up the Commoner Club, which attempts to teach the girls more about life outside the school, while Kimito gradually learns about the odd girls surrounding him. [Written by MAL Rewrite]

Narumi Katou is a middle-aged man who suffers from the bizarre ZONAPHA Syndrome: a rare and inexplicable disease that causes its victims to endure severe seizures at random, with the only cure being to watch someone laugh. One day, during Narumi's part time job, a young boy with a giant suitcase fleeing from three adults runs into him. The boy introduces himself as Masaru Saiga, the new owner of the famous Saiga Enterprises following his father's recent death. However, other members of his family are trying to assassinate him and claim the fortune for themselves. Determined to save the child, Narumi helps Masaru escape and ends up fighting the pursuers, only to discover that they are sentient humanoid puppets with superhuman strength. As Narumi is about to lose, a white-haired girl suddenly joins the fray and swiftly summons yet another puppet from the boy's suitcase, claiming herself to be Shirogane, Masaru's guardian. Karakuri Circus follows three people from different backgrounds whose fates intertwine and diverge as they unravel the mysteries of an ancient tale of love and betrayal, and the long, ancient battle between humans and puppets. [Written by MAL Rewrite]