After the 12 Gold Saints sacrifice their lives to destroy the Wailing Wall, The Bronze Saints enter the deepest realm of the Underworld, Elysion, where they face off aganist Hades's two most powerful servants: The Twin Gods, Hypnos and Thanatos, before they can reach Hades for the final battle.

As an expression of gratitude for the heroes of both the ".hack//Sign" and the ".hack" game series, Helba has prepared a special event for all the characters to find the newly established "Twilight Hot Springs." The characters can get their well deserved rest and relaxation by having a soak in the wonderful hot springs, but there is only one problem—the hot springs are hidden and there have been mysterious player murders. With the only clue being the word “GIFT," the race has begun to find the culprit and the location of the hot springs. [Written by MAL Rewrite]

In the Binfield Kingdom Chronicle, it is said that there was once a small, peaceful country called the Kingdom of Winfield, whose king and royal family possessed great white wings. Hamura Shou is newly enrolled at Yuusei Academy. After hearing about a student named Misonou Kai from the headmaster, Shou comes to believe that Kai is his younger twin brother, who he was separated from when he was younger. However, after a mysterious earthquake, Shou is suddenly carried into another world with two other students. It is in this new world that, after being attacked by a monster, Shou suddenly unleashes great, white wings.

Centuries after the events of Saga Brave, a third race called the Mauve has emerged alongside Humans and Mazoku. Identified by their purple blood and immense intelligence, the Mauve are shunned by the other two races and are viewed as a threat to the peace of the world. Having experienced this prejudice first-hand, a teenage Mauve named Galette Revolt journeys forth to find a way for all races to understand each other by playing Battle Spirits. However, other factions from each race aim to maintain the peace/reform the world through more nefarious ways...