Set after the time of Sakura Taisen 4 (game), Kanzaki Sumire, during a training session was noticed that her spirit power (rei-ryoku) has dropped tremendously, below levels required to pilot the Koubu-nishiki. She decides to retire from the Kageki-dan while she still holds the position of "top star" in the dai-teikoku gekijyou.

In the future humankind has expanded and colonized other planets. Then an alien species, Victim, attacks the human colonies leaving only one planet, Zion. In an effort to stop Victim from destroying the last planet a training school, GOA, is set up to gather boys from the Zion colonies and train them to become pilots of the Ingrids AKA The Goddesses, five fighting robots that protect Zion. The boys must possess a rare blood type, EO, as well as a special ability, or EX. Zero (Candidate 88) has just arrived in GOA when he falls into the cockpit of the Ingrid Eeva-Leena. Since the synch between pilot and Ingrid are very sensitive everyone believes the Goddess will kill Zero in an attempt to synch. Just before Zero passes out he makes a full synch with the Goddess. Before he can find out more about the incident, his pilot training begins.

In the year 2066, the Republic of Hontworl, a charter member of the United Nations, leaves the organization without explaining its motives. This causes an outrage within the U.N. and places the security of the world on edge. Soon after this incident, Myori, the capital of the Republic of Triad, is attacked by a bird-like, flying fortress known as the Turtle King. The International Science Organization, which is headed by Dr. Kouzaburou Nanbu, is tasked to deal with this mysterious enemy. At the same time, the leading scientists of the ISO are disappearing. The five members of the Science Ninja Team, the Gatchaman warriors, are called upon to get to the bottom of things. It's been years since the team has fought Berg Katze and the infamous Galactor organization. Will Ken, also known as the Eagle, still be able to lead his team to victory against this supreme force of evil?

Second season of Fairy Gone.